Software Engineer, Agents

Output Biosciences is a biotech company focused on creating innovative drug treatments through advanced biological reasoning models. They are seeking a Software Engineer to build agent infrastructure that transforms model capabilities into usable tools and workflows, including orchestration layers and internal tooling for research teams.

Responsibilities:

• You will design and build the agent orchestration system that composes model capabilities into multi-step workflows, handling sequencing, state management, and error recovery
• You will implement agent skills and tools that expose model capabilities to automated and interactive workflows
• You will build inference infrastructure for serving models efficiently, optimizing for latency, throughput, and reliability
• You will design and build APIs and integrations, including MCP-compatible interfaces, that allow external systems and users to interact with Output's models
• You will build internal tools that accelerate the research team's work, from experiment management to evaluation pipelines
• You will establish and maintain software engineering practices across the team: testing, CI/CD, code review, and documentation